生物，化学和医药学院 - Department of Biology, Chemistry, and Pharmacy教育学与心理学学院 - Department of Education and Psychology地球科学学院 - Department of Earth Sciences历史与文化学学院 - Department of History and Cultural Studies数学与计算机科学学院 - Department of Mathematics and Computer Science哲学与文学学院 - Department of Philosophy and Humanities物理学院 - Department of Physics政治学与社会学学院 - Department of Political and Social Sciences法学院 - Department of Law动物医学院 - Department of Veterinary Medicine经济学学院 - Department of Business and Economics夏瑞蒂医学院（柏林自由大学-柏林洪堡大学合作学院） - Charité - Berlin School of Medicine (a joint institution of the Freie Universitaet Berlin and the Humboldt-Universitaet zu Berlin)Central InstitutesInstitute for East European StudiesInstitute for Latin American StudiesJohn F. Kennedy Institute for North American Studies